IPSSP (Protein Secondary Structure Prediction)

IPSSP (Iterative Protein Secondary Structure Parse) (Instructions) (Reload this page)

Reference: Z. Aydin, Y. Altunbasak and M. Borodovsky, "Protein secondary structure prediction for a single-sequence using hidden semi-Markov models," BMC Bioinformatics, 7:178, 2006.
1) Maximum allowed amino acid sequence length: 10,000. 2) Analyzing speed: 70 aa in 60 seconds.

Web page maintained by

Input Sequence
Title (optional): Sequence Text: >Input Sequence 1 MKAIFVLNAQHDEAVDANSLAEAKVLANRELDKYGVSDYYKNLINNAKTVEGVKALIDEILAALP >Input Sequence 2 ALVELKVPDIGGHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAEGTA Sequence File upload:
Training Dataset:
Conversion Rule:
Length Adjustments (whether length adjustments will be applied or not):


Output Options
E-Mail Address (Prediction results will be sent by email, useful for long sequences)
Run